WebThe eukaryotic tree. From Burki et al. 2024. The New Tree of Eukaryotes. Trends in Ecology & Evolution. DOI: 10.1016/j.tree.2024.08.008. The PR 2 (Protist Ribosomal Reference) database ecosystem is a set of three interconnected 18S rRNA databases that are useful in particular for metabarcoding applications. This web site focuses on the PR 2 reference … WebThe paper announcing mothur’s release has gone on to become one of the most cited bioinformatics tool for analyzing 16S rRNA gene sequences. Be sure to read the 2024 …
Lead - Microbes and Social Equity working group
WebWelcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of … WebProper Citation: mothur (RRID:SCR_011947) Description: An open-source software package for describing and comparing microbial communities. It incorporates the functionality of a number of computational tools, calculators, and visualization tools. chase brier creek
Does anyone know how to make phylogenetic tree using mothur?
WebWelcome to the SILVA rRNA database project. A comprehensive on-line resource for quality checked and aligned ribosomal RNA sequence data. SILVA provides comprehensive, quality checked and regularly updated datasets of aligned small (16S/18S, SSU) and large subunit (23S/28S, LSU) ribosomal RNA (rRNA) sequences for all three domains of life (Bacteria, … Web28 aug. 2024 · Hello, I, like some others I have seen on the forums here, am in a situation where my MiSeq run produced very low quality reverse reads and so I would like to attempt to use just the forward reads for my analysis. The forward reads are of a high average overall quality, with FastQC (suggesting that the per base average quality score is well … WebUse secondary sources sparingly, for instance, when the original work is out of print, unavailable through usual sources, or not available in English. Give the secondary source in the reference list; in text, name the original work and give a citation for the secondary source. For example, if Allport's work is cited in Nicholson and you did not ... chase briscoe 2023